{
  "_id": "6ae94084818c9e3ef6dbea89",
  "Package": "cleanNPN",
  "Title": "Reproducible Workflow for Cleaning National Phenology Network\nStatus and Intensity Data",
  "Version": "0.0.0.9000",
  "Authors@R": "c(\nperson(\"Brianna\", \"Shepherd\", email= \"bls227@pitt.edu\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0009-0009-6338-0454\", affiliation = \"Biological Sciences Department, Univeristy of Pittsburgh, Pittsburgh, PA, USA\")),\nperson(\"Yiluan\", \"Song\", email= \"yiluansong@pitt.edu\", role = c(\"aut\"), comment = c(ORCID = \"0000-0003-3660-3797\", affiliation = \"Biological Sciences Department, Univeristy of Pittsburgh, Pittsburgh, PA, USA\")))",
  "Description": "The `cleanNPN` R package provides a reproducible workflow\nfor processing National Phenology Network (NPN) status and\nintensity phenological data, enabling researchers to quickly\nclean raw datasets using a suite of built-in functions.",
  "BugReports": "https://github.com/pitt-songlab/cleanNPN/issues",
  "License": "file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "LazyData": "true",
  "Config/pak/sysreqs": "libicu-dev libxml2-dev libssl-dev",
  "Repository": "https://pitt-songlab.r-universe.dev",
  "Date/Publication": "2026-11-02 21:01:12 UTC",
  "RemoteUrl": "https://github.com/pitt-songlab/cleanNPN",
  "RemoteRef": "HEAD",
  "RemoteSha": "66befcf2fe7262f3ddf6027cc63e530bc1476695",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-11-03 01:52:14 UTC",
    "User": "root"
  },
  "Author": "Brianna Shepherd [aut, cre] (ORCID:\n<https://orcid.org/0009-0009-6338-0454>, affiliation: Biological\nSciences Department, Univeristy of Pittsburgh, Pittsburgh, PA, USA),\nYiluan Song [aut] (ORCID: <https://orcid.org/0000-0003-3660-3797>,\naffiliation: Biological Sciences Department, Univeristy of\nPittsburgh, Pittsburgh, PA, USA)",
  "Maintainer": "Brianna Shepherd <bls227@pitt.edu>",
  "_user": "pitt-songlab",
  "_type": "src",
  "_file": "cleanNPN_0.0.0.9000.tar.gz",
  "_fileid": "https://r2.ropensci.org/d7b61e299c4d4529599ad85dc99b831dbbf02ac515099b4de37f5a92bd499adf",
  "_filesize": 196266,
  "_sha256": "d7b61e299c4d4529599ad85dc99b831dbbf02ac515099b4de37f5a92bd499adf",
  "_expires": "2027-02-11T02:01:38.000Z",
  "_created": "2026-11-03T01:52:14.000Z",
  "_published": "2026-11-03T02:01:39.928Z",
  "_upstream": "https://github.com/pitt-songlab/cleanNPN",
  "_status": "failure",
  "_maintainer": {
    "name": "Brianna Shepherd",
    "email": "bls227@pitt.edu",
    "login": "blshepherd",
    "orcid": "0009-0009-6338-0454",
    "description": "",
    "uuid": 261966389
  },
  "_jobs": [
    {
      "job": 125676305407,
      "time": 124,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "13197701877"
    },
    {
      "job": 125676305425,
      "time": 118,
      "config": "linux-release-x86_64",
      "r": "4.6.2",
      "check": "WARNING",
      "artifact": "13198495510"
    },
    {
      "job": 125676305423,
      "time": 96,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "13197962027"
    },
    {
      "job": 125676305493,
      "time": 103,
      "config": "macos-release-arm64",
      "r": "4.6.2",
      "check": "WARNING",
      "artifact": "13197477446"
    },
    {
      "job": 125675192226,
      "time": 198,
      "config": "source",
      "r": "4.6.2",
      "check": "ERROR",
      "artifact": "13197931214"
    },
    {
      "job": 125676305359,
      "time": 96,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "13198255873"
    },
    {
      "job": 125676305445,
      "time": 71,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "13197526444"
    },
    {
      "job": 125676305454,
      "time": 87,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "13197297162"
    },
    {
      "job": 125676305478,
      "time": 59,
      "config": "windows-release-x86_64",
      "r": "4.6.2",
      "check": "WARNING",
      "artifact": "13197271662"
    }
  ],
  "_buildurl": "https://github.com/r-universe/pitt-songlab/actions/runs/41562171249",
  "_commit": {
    "id": "66befcf2fe7262f3ddf6027cc63e530bc1476695",
    "author": "blshepherd <briannashepherd98@gmail.com>",
    "committer": "blshepherd <briannashepherd98@gmail.com>",
    "message": "adding examples to vingette\n",
    "time": 1793653272
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "lubridate",
      "role": "Imports"
    },
    {
      "package": "rnpn",
      "role": "Imports"
    },
    {
      "package": "slider",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "pitt-songlab",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-08",
      "n": 3
    },
    {
      "week": "2026-17",
      "n": 2
    },
    {
      "week": "2026-20",
      "n": 1
    },
    {
      "week": "2026-21",
      "n": 2
    },
    {
      "week": "2026-24",
      "n": 3
    },
    {
      "week": "2026-25",
      "n": 2
    },
    {
      "week": "2026-26",
      "n": 3
    },
    {
      "week": "2026-27",
      "n": 3
    },
    {
      "week": "2026-28",
      "n": 9
    },
    {
      "week": "2026-29",
      "n": 3
    },
    {
      "week": "2026-30",
      "n": 6
    },
    {
      "week": "2026-31",
      "n": 2
    },
    {
      "week": "2026-32",
      "n": 6
    },
    {
      "week": "2026-33",
      "n": 9
    },
    {
      "week": "2026-34",
      "n": 13
    },
    {
      "week": "2026-35",
      "n": 8
    },
    {
      "week": "2026-36",
      "n": 6
    },
    {
      "week": "2026-37",
      "n": 5
    },
    {
      "week": "2026-38",
      "n": 3
    },
    {
      "week": "2026-39",
      "n": 13
    },
    {
      "week": "2026-40",
      "n": 13
    },
    {
      "week": "2026-41",
      "n": 14
    },
    {
      "week": "2026-42",
      "n": 36
    },
    {
      "week": "2026-43",
      "n": 10
    },
    {
      "week": "2026-44",
      "n": 5
    },
    {
      "week": "2026-45",
      "n": 7
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "yiluansong",
      "count": 50,
      "uuid": 44077975
    },
    {
      "user": "blshepherd",
      "count": 15,
      "uuid": 261966389
    }
  ],
  "_userbio": {
    "uuid": 256175350,
    "type": "organization",
    "name": "pitt-songlab",
    "followers": 0
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/cleanNPN"
  },
  "_devurl": "https://github.com/pitt-songlab/cleannpn",
  "_searchresults": 1,
  "_rbuild": "4.6.2",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/cleanNPN.html",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_cranurl": false,
  "_exports": [
    "calc_first_yes",
    "clean_by_leading_no",
    "clean_by_resolving_conflict",
    "clean_by_trailing_yes",
    "clean_by_window",
    "clean_data",
    "download_test_data"
  ],
  "_datasets": [
    {
      "name": "df_flower",
      "title": "",
      "object": "df_flower",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "observation_id",
        "update_datetime",
        "site_id",
        "latitude",
        "longitude",
        "elevation_in_meters",
        "state",
        "species_id",
        "genus",
        "species",
        "common_name",
        "kingdom",
        "individual_id",
        "phenophase_id",
        "phenophase_description",
        "observation_date",
        "day_of_year",
        "phenophase_status",
        "intensity_category_id",
        "intensity_value",
        "abundance_value",
        "observedby_person_id",
        "site_name",
        "dataset_id"
      ],
      "rows": 1907,
      "table": true,
      "tojson": true
    },
    {
      "name": "df_leaf",
      "title": "",
      "object": "df_leaf",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "observation_id",
        "update_datetime",
        "site_id",
        "latitude",
        "longitude",
        "elevation_in_meters",
        "state",
        "species_id",
        "genus",
        "species",
        "common_name",
        "kingdom",
        "individual_id",
        "phenophase_id",
        "phenophase_description",
        "observation_date",
        "day_of_year",
        "phenophase_status",
        "intensity_category_id",
        "intensity_value",
        "abundance_value",
        "observedby_person_id",
        "site_name",
        "dataset_id"
      ],
      "rows": 2248,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "calc_first_yes",
      "title": "Calculate the day of first \"yes\" observation",
      "topics": [
        "calc_first_yes"
      ]
    },
    {
      "page": "clean_by_leading_no",
      "title": "Count \"no\" observations in a leading window before each observation",
      "topics": [
        "clean_by_leading_no"
      ]
    },
    {
      "page": "clean_by_resolving_conflict",
      "title": "Resolve conflicting observations by keeping the most experienced observer",
      "topics": [
        "clean_by_resolving_conflict"
      ]
    },
    {
      "page": "clean_by_trailing_yes",
      "title": "Count \"yes\" observations in a trailing window after each observation",
      "topics": [
        "clean_by_trailing_yes"
      ]
    },
    {
      "page": "clean_by_window",
      "title": "Restrict observations to a day-of-year window",
      "topics": [
        "clean_by_window"
      ]
    },
    {
      "page": "clean_data",
      "title": "Clean phenophase observations using a configurable sequence of filters",
      "topics": [
        "clean_data"
      ]
    },
    {
      "page": "download_test_data",
      "title": "Download example phenology data for red maple from the USA-NPN",
      "topics": [
        "download_test_data"
      ]
    }
  ],
  "_readme": "https://github.com/pitt-songlab/cleanNPN/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "cli",
    "cpp11",
    "curl",
    "dplyr",
    "generics",
    "glue",
    "httr2",
    "jsonlite",
    "lifecycle",
    "lubridate",
    "magrittr",
    "openssl",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "rlang",
    "rnpn",
    "slider",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "utf8",
    "vctrs",
    "warp",
    "withr",
    "xml2"
  ],
  "_score": 3.113943352306837,
  "_indexed": true,
  "_nocasepkg": "cleannpn",
  "_universes": [
    "pitt-songlab",
    "blshepherd"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.0.9000",
      "date": "2026-11-03T01:54:28.000Z",
      "distro": "resolute",
      "commit": "66befcf2fe7262f3ddf6027cc63e530bc1476695",
      "fileid": "https://r2.ropensci.org/6a712ca265cf3d606dff9032b4d1ff2077b97bb0358eb07a9f797b824c52114a",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/pitt-songlab/actions/runs/41562171249"
    },
    {
      "r": "4.6.2",
      "os": "linux",
      "version": "0.0.0.9000",
      "date": "2026-11-03T01:54:21.000Z",
      "distro": "resolute",
      "commit": "66befcf2fe7262f3ddf6027cc63e530bc1476695",
      "fileid": "https://r2.ropensci.org/5d8da9864e5ab1cd336da8fc4be7f01bea1764004971813d59785c5b3dfc153b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/pitt-songlab/actions/runs/41562171249"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.0.9000",
      "date": "2026-11-03T01:58:11.000Z",
      "commit": "66befcf2fe7262f3ddf6027cc63e530bc1476695",
      "fileid": "https://r2.ropensci.org/e399f5a424a948118005ae77811131976b12869cd9a0bc4bc324188245033240",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/pitt-songlab/actions/runs/41562171249"
    },
    {
      "r": "4.6.2",
      "os": "mac",
      "version": "0.0.0.9000",
      "date": "2026-11-03T02:01:06.000Z",
      "commit": "66befcf2fe7262f3ddf6027cc63e530bc1476695",
      "fileid": "https://r2.ropensci.org/959c7762386d21909611ca25229382fbaafd042879bb80fb976a7c71f0744eea",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/pitt-songlab/actions/runs/41562171249"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.0.9000",
      "date": "2026-11-03T01:54:09.000Z",
      "commit": "66befcf2fe7262f3ddf6027cc63e530bc1476695",
      "fileid": "https://r2.ropensci.org/b317842e66b575ea7827e2bc85b587358bfa476ccb92c48c6e9718271c2abfe7",
      "status": "success",
      "buildurl": "https://github.com/r-universe/pitt-songlab/actions/runs/41562171249"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.0.9000",
      "date": "2026-11-03T01:53:31.000Z",
      "commit": "66befcf2fe7262f3ddf6027cc63e530bc1476695",
      "fileid": "https://r2.ropensci.org/20f1e82fde65d6327bef234024c9c68e2cac22c4f5ee4fd9c38a903bc3e8ecff",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/pitt-songlab/actions/runs/41562171249"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.0.9000",
      "date": "2026-11-03T01:53:51.000Z",
      "commit": "66befcf2fe7262f3ddf6027cc63e530bc1476695",
      "fileid": "https://r2.ropensci.org/596e538ae87c8cf8bc3655bd7adc5ec58e50b06baead5823f0784ebed6b2fb25",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/pitt-songlab/actions/runs/41562171249"
    },
    {
      "r": "4.6.2",
      "os": "win",
      "version": "0.0.0.9000",
      "date": "2026-11-03T01:53:27.000Z",
      "commit": "66befcf2fe7262f3ddf6027cc63e530bc1476695",
      "fileid": "https://r2.ropensci.org/06d1866c8e631772b4214fda783a4e8ec75363e02ed8867fffaa13b960cff826",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/pitt-songlab/actions/runs/41562171249"
    }
  ]
}